Messages do not get through a pipeline - How to debug?

Okay, I used the debug function, and considering I get no debug messages in the log, something is probably very wrong with the pipeline.

This is my current pipeline stage 0 rule.

rule "Extract Snort alert fields"
when
  has_field("message")
then
  debug("Processing message in snort pipeline - ".$message.message);
  let m = regex("^\\s?\\[(\\d+):(\\d+):(\\d+)\\] (.+?) \\[Classification: (.+?)\\] \\[Priority: (\\d+)] \\{(.+?)\\} ((?:\\d{1,3}\\.\\d{1,3}\\.\\d{1,3}\\.\\d{1,3})|(?:(?:[0-9a-fA-F]{1,4}:){7,7}[0-9a-fA-F]{1,4}|(?:[0-9a-fA-F]{1,4}:){1,7}:|(?:[0-9a-fA-F]{1,4}:){1,6}:[0-9a-fA-F]{1,4}|(?:[0-9a-fA-F]{1,4}:){1,5}(?::[0-9a-fA-F]{1,4}){1,2}|(?:[0-9a-fA-F]{1,4}:){1,4}(?::[0-9a-fA-F]{1,4}){1,3}|(?:[0-9a-fA-F]{1,4}:){1,3}(?::[0-9a-fA-F]{1,4}){1,4}|(?:[0-9a-fA-F]{1,4}:){1,2}(?::[0-9a-fA-F]{1,4}){1,5}|[0-9a-fA-F]{1,4}:(?:(?::[0-9a-fA-F]{1,4}){1,6})|:(?:(?::[0-9a-fA-F]{1,4}){1,7}|:)|fe80:(?::[0-9a-fA-F]{0,4}){0,4}%[0-9a-zA-Z]{1,}|::(?:ffff(?::0{1,4}){0,1}:){0,1}(?:(?:25[0-5]|(?:2[0-4]|1{0,1}[0-9]){0,1}[0-9])\\.){3,3}(?:25[0-5]|(?:2[0-4]|1{0,1}[0-9]){0,1}[0-9])|(?:[0-9a-fA-F]{1,4}:){1,4}:(?:(?:25[0-5]|(?:2[0-4]|1{0,1}[0-9]){0,1}[0-9])\\.){3,3}(?:25[0-5]|(?:2[0-4]|1{0,1}[0-9]){0,1}[0-9])))(:(\\d{1,5}))? -> ((?:\\d{1,3}\\.\\d{1,3}\\.\\d{1,3}\\.\\d{1,3})|(?:(?:[0-9a-fA-F]{1,4}:){7,7}[0-9a-fA-F]{1,4}|(?:[0-9a-fA-F]{1,4}:){1,7}:|(?:[0-9a-fA-F]{1,4}:){1,6}:[0-9a-fA-F]{1,4}|(?:[0-9a-fA-F]{1,4}:){1,5}(?::[0-9a-fA-F]{1,4}){1,2}|(?:[0-9a-fA-F]{1,4}:){1,4}(?::[0-9a-fA-F]{1,4}){1,3}|(?:[0-9a-fA-F]{1,4}:){1,3}(?::[0-9a-fA-F]{1,4}){1,4}|(?:[0-9a-fA-F]{1,4}:){1,2}(?::[0-9a-fA-F]{1,4}){1,5}|[0-9a-fA-F]{1,4}:(?:(?::[0-9a-fA-F]{1,4}){1,6})|:(?:(?::[0-9a-fA-F]{1,4}){1,7}|:)|fe80:(?::[0-9a-fA-F]{0,4}){0,4}%[0-9a-zA-Z]{1,}|::(?:ffff(?::0{1,4}){0,1}:){0,1}(?:(?:25[0-5]|(?:2[0-4]|1{0,1}[0-9]){0,1}[0-9])\\.){3,3}(?:25[0-5]|(?:2[0-4]|1{0,1}[0-9]){0,1}[0-9])|(?:[0-9a-fA-F]{1,4}:){1,4}:(?:(?:25[0-5]|(?:2[0-4]|1{0,1}[0-9]){0,1}[0-9])\\.){3,3}(?:25[0-5]|(?:2[0-4]|1{0,1}[0-9]){0,1}[0-9])))(:(\\d{1,5}))?\\R?", to_string($message.message));

  set_field("snort_alert", true);

  set_field("generator_id", m["0"]);
  set_field("signature_id", m["1"]);
  set_field("signature_revision_id", m["2"]);

  set_field("description", m["3"]);
  set_field("classification", m["4"]);
  set_field("priority", to_long(m["5"]));
  set_field("protocol", m["6"]);

  set_field("src_addr", m["7"]);
  set_field("src_port", to_long(m["9"]));

  set_field("dst_addr", m["10"]);
  set_field("dst_port", to_long(m["12"]));
end

The pipeline is connected to a Snort stream, which takes messages from the All Messages stream, matches them against these two rules:

message must match regular expression ^\s?\[\d+:\d+:\d+].*
application_name must match exactly snort

And when I use the stream tester, messages do pass both of the rules and get correctly routed into the stream correctly. The issue therefore has to be somewhere in the pipeline.